Price will vary based on genome size, reach out to us for a quote. We are happy to provide a free consultation.
Genome scaffolding utilizes a customer-provided draft genome assembly along with Hi-C data to generate chromosome-scale scaffolds. Deliverables include a .FASTA genome assembly file, a final Hi-C heatmap, assembly metrics in table format, and methods used for analyses.
Full genome build consists of a de novo genome assembly followed by Hi-C scaffolding to generate chromosome-scale scaffolds. Deliverables include a .FASTA file for both the contig-level and scaffold-level assemblies, assembly metrics in table format including BUSCO scores, a final Hi-C heatmap, and methods used for analyses.
Full genome build plus phasing includes de novo genome assembly and phasing using PacBio HiFi data in combination with Hi-C data followed by generation of chromosome-scale scaffolds for both haplotypes. Deliverables for both haplotypes include a .FASTA file for both the contig-level and scaffold-level assemblies, assembly metrics in table format including BUSCO scores, a final Hi-C heatmap, a synteny plot comparing the haplotypes, and methods used for analyses.
Take your assembled genome to the next level by annotating known genes, identifying structural variants, or comparing to related genomes
With a provided chromosome-scale genome assembly, we will use a combination of ab-initio and evidence-based (RNA-Seq preferred) methods to produce gene annotations for your organism. Deliverables: Gene Models (.gff3/.gff), Protein Sequences (.fasta), Coding DNA Sequences (.fasta), Transcript Sequences (.fasta), Summary Statistics (.txt), and methods used for analyses.
Large structural variants (inversions, translocations) can be detected with high-coverage Hi-C data aligned to a reference genome. Deliverables: heatmaps and dot plots showing any SV detected and methods used for analyses.
Per-genome cost to perform similarity analyses for two or more chromosome-scale genome assemblies. Deliverables include all plots generated during the comparison, including chromosome to chromosome as well as full genome to full genome, and detailed methods used for analyses.
We look forward to consulting with you on your custom bioinformatics projects and needs
We offer a free 30 minute consultation to discuss your bioinformatics research project and our premium services. Reach out to our Lead Bioinformatician at tara.rickman@mosaicgenome.com
Custom bioinformatics analyses fulfilling your unique research requirements
For quotes and questions, contact our Director of Operations: ryan.mangelson@mosaicgenome.com
We use cookies to analyze website traffic and optimize your website experience. By accepting our use of cookies, your data will be aggregated with all other user data.